Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4002368..4002536 | Replicon | chromosome |
| Accession | NZ_CP058118 | ||
| Organism | Klebsiella michiganensis strain RHBSTW-00167 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4002375..4002478 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4002368..4002536 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV105_RS19235 | 3997642..3998160 | + | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
| HV105_RS19240 | 3998179..3998943 | + | 765 | WP_181249976.1 | fimbria/pilus periplasmic chaperone | - |
| HV105_RS19245 | 3998946..4001276 | + | 2331 | WP_181249977.1 | fimbria/pilus outer membrane usher protein | - |
| HV105_RS19250 | 4001291..4002250 | + | 960 | WP_181249978.1 | spore coat U domain-containing protein | - |
| - | 4002368..4002536 | + | 169 | - | - | Antitoxin |
| - | 4002375..4002478 | - | 104 | - | - | Toxin |
| HV105_RS19255 | 4002635..4002973 | - | 339 | WP_004103344.1 | YebY family protein | - |
| HV105_RS19260 | 4002990..4003859 | - | 870 | WP_181249979.1 | copper homeostasis membrane protein CopD | - |
| HV105_RS19265 | 4003864..4004238 | - | 375 | WP_004852090.1 | CopC domain-containing protein YobA | - |
| HV105_RS19270 | 4004374..4004604 | + | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| HV105_RS19275 | 4004683..4005342 | + | 660 | WP_004852093.1 | exodeoxyribonuclease X | - |
| HV105_RS19280 | 4005349..4007409 | - | 2061 | WP_009652043.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165838 NZ_CP058118:c4002478-4002375 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT165838 NZ_CP058118:4002368-4002536 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
