Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2244527..2244695 | Replicon | chromosome |
| Accession | NZ_CP058112 | ||
| Organism | Klebsiella grimontii strain RHBSTW-00181 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2244585..2244688 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2244527..2244695 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV112_RS11000 | 2239653..2241713 | + | 2061 | WP_064342867.1 | oligopeptidase B | - |
| HV112_RS11005 | 2241720..2242379 | - | 660 | WP_004134816.1 | exodeoxyribonuclease X | - |
| HV112_RS11010 | 2242458..2242688 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| HV112_RS11015 | 2242824..2243198 | + | 375 | WP_004134817.1 | CopC domain-containing protein YobA | - |
| HV112_RS11020 | 2243203..2244072 | + | 870 | WP_004134819.1 | copper homeostasis membrane protein CopD | - |
| HV112_RS11025 | 2244089..2244427 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2244527..2244695 | - | 169 | - | - | Antitoxin |
| - | 2244585..2244688 | + | 104 | - | - | Toxin |
| HV112_RS11030 | 2244813..2245772 | - | 960 | WP_049085573.1 | spore coat U domain-containing protein | - |
| HV112_RS11035 | 2245787..2248117 | - | 2331 | WP_049089570.1 | fimbrial biogenesis outer membrane usher protein | - |
| HV112_RS11040 | 2248120..2248884 | - | 765 | WP_004134823.1 | molecular chaperone | - |
| HV112_RS11045 | 2248903..2249421 | - | 519 | WP_049099811.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2125542..2257377 | 131835 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165820 NZ_CP058112:2244585-2244688 [Klebsiella grimontii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT165820 NZ_CP058112:c2244695-2244527 [Klebsiella grimontii]
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
