Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1909344..1909612 | Replicon | chromosome |
| Accession | NZ_CP058057 | ||
| Organism | Escherichia fergusonii strain RHB02-C22 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1909471..1909574 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1909344..1909612 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVV54_RS09230 | 1905894..1906556 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| HVV54_RS09235 | 1906580..1907236 | - | 657 | WP_046081494.1 | carbon-nitrogen hydrolase family protein | - |
| HVV54_RS09240 | 1907343..1907573 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| HVV54_RS09245 | 1907712..1908086 | + | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| HVV54_RS09250 | 1908089..1908961 | + | 873 | WP_181203379.1 | copper homeostasis membrane protein CopD | - |
| HVV54_RS09255 | 1908973..1909314 | + | 342 | WP_000976177.1 | YebY family protein | - |
| - | 1909344..1909612 | - | 269 | - | - | Antitoxin |
| - | 1909471..1909574 | + | 104 | - | - | Toxin |
| HVV54_RS09260 | 1909708..1910364 | + | 657 | WP_181203380.1 | protein-serine/threonine phosphatase | - |
| HVV54_RS09265 | 1910365..1910556 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HVV54_RS09270 | 1910661..1910897 | - | 237 | WP_181203381.1 | DUF1480 family protein | - |
| HVV54_RS09275 | 1911015..1912454 | - | 1440 | WP_181203382.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165794 NZ_CP058057:1909471-1909574 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT165794 NZ_CP058057:c1909612-1909344 [Escherichia fergusonii]
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
