Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1821022..1821290 | Replicon | chromosome |
| Accession | NZ_CP057918 | ||
| Organism | Escherichia fergusonii strain RHB10-C04 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1821149..1821252 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1821022..1821290 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVW38_RS08695 | 1817572..1818234 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| HVW38_RS08700 | 1818258..1818914 | - | 657 | WP_000075607.1 | carbon-nitrogen hydrolase family protein | - |
| HVW38_RS08705 | 1819021..1819251 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| HVW38_RS08710 | 1819390..1819764 | + | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| HVW38_RS08715 | 1819767..1820639 | + | 873 | WP_046077481.1 | copper homeostasis membrane protein CopD | - |
| HVW38_RS08720 | 1820651..1820992 | + | 342 | WP_000976177.1 | YebY family protein | - |
| - | 1821022..1821290 | - | 269 | - | - | Antitoxin |
| - | 1821149..1821252 | + | 104 | - | - | Toxin |
| HVW38_RS08725 | 1821386..1822042 | + | 657 | WP_046077482.1 | protein-serine/threonine phosphatase | - |
| HVW38_RS08730 | 1822043..1822234 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HVW38_RS08735 | 1822339..1822575 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HVW38_RS08740 | 1822693..1824132 | - | 1440 | WP_046077670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165766 NZ_CP057918:1821149-1821252 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT165766 NZ_CP057918:c1821290-1821022 [Escherichia fergusonii]
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
