Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1821025..1821293 | Replicon | chromosome |
| Accession | NZ_CP057896 | ||
| Organism | Escherichia fergusonii strain RHB10-C23 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1821152..1821255 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1821025..1821293 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVW49_RS08695 | 1817575..1818237 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| HVW49_RS08700 | 1818261..1818917 | - | 657 | WP_000075607.1 | carbon-nitrogen hydrolase family protein | - |
| HVW49_RS08705 | 1819024..1819254 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| HVW49_RS08710 | 1819393..1819767 | + | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| HVW49_RS08715 | 1819770..1820642 | + | 873 | WP_046077481.1 | copper homeostasis membrane protein CopD | - |
| HVW49_RS08720 | 1820654..1820995 | + | 342 | WP_000976177.1 | YebY family protein | - |
| - | 1821025..1821293 | - | 269 | - | - | Antitoxin |
| - | 1821152..1821255 | + | 104 | - | - | Toxin |
| HVW49_RS08725 | 1821389..1822045 | + | 657 | WP_046077482.1 | protein-serine/threonine phosphatase | - |
| HVW49_RS08730 | 1822046..1822237 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HVW49_RS08735 | 1822342..1822578 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HVW49_RS08740 | 1822696..1824135 | - | 1440 | WP_046077670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165743 NZ_CP057896:1821152-1821255 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT165743 NZ_CP057896:c1821293-1821025 [Escherichia fergusonii]
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
