Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1841947..1842092 | Replicon | chromosome |
| Accession | NZ_CP057722 | ||
| Organism | Klebsiella pneumoniae strain RHB16-C24 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1841983..1842085 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1841947..1842092 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVX23_RS08825 | 1837077..1839137 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HVX23_RS08830 | 1839141..1839800 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HVX23_RS08835 | 1839879..1840109 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HVX23_RS08840 | 1840222..1840596 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HVX23_RS08845 | 1840600..1841469 | + | 870 | WP_040224089.1 | copper homeostasis membrane protein CopD | - |
| HVX23_RS08850 | 1841486..1841824 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1841947..1842092 | - | 146 | - | - | Antitoxin |
| - | 1841983..1842085 | + | 103 | - | - | Toxin |
| HVX23_RS08855 | 1842461..1842604 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HVX23_RS08860 | 1842709..1843677 | - | 969 | WP_181813154.1 | VirK/YbjX family protein | - |
| HVX23_RS08865 | 1843834..1844487 | + | 654 | WP_181813155.1 | protein-serine/threonine phosphatase | - |
| HVX23_RS08870 | 1844484..1844675 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HVX23_RS08875 | 1844773..1845012 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HVX23_RS08880 | 1845128..1846561 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T165704 NZ_CP057722:1841983-1842085 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT165704 NZ_CP057722:c1842092-1841947 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
