Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 229518..229786 | Replicon | chromosome |
| Accession | NZ_CP057692 | ||
| Organism | Escherichia fergusonii strain RHB17-C11 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 229645..229748 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 229518..229786 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVX29_RS01120 | 226068..226730 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| HVX29_RS01125 | 226754..227410 | - | 657 | WP_000075607.1 | carbon-nitrogen hydrolase family protein | - |
| HVX29_RS01130 | 227517..227747 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| HVX29_RS01135 | 227886..228260 | + | 375 | WP_000168726.1 | CopC domain-containing protein YobA | - |
| HVX29_RS01140 | 228263..229135 | + | 873 | WP_000928495.1 | copper homeostasis membrane protein CopD | - |
| HVX29_RS01145 | 229147..229488 | + | 342 | WP_000976177.1 | YebY family protein | - |
| - | 229518..229786 | - | 269 | - | - | Antitoxin |
| - | 229645..229748 | + | 104 | - | - | Toxin |
| HVX29_RS01150 | 229882..230538 | + | 657 | WP_000812708.1 | protein-serine/threonine phosphatase | - |
| HVX29_RS01155 | 230539..230730 | - | 192 | WP_002431587.1 | YebW family protein | - |
| HVX29_RS01160 | 230835..231071 | - | 237 | WP_002431586.1 | DUF1480 family protein | - |
| HVX29_RS01165 | 231190..232629 | - | 1440 | WP_002431585.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165674 NZ_CP057692:229645-229748 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT165674 NZ_CP057692:c229786-229518 [Escherichia fergusonii]
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
