Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 222951..223219 | Replicon | chromosome |
| Accession | NZ_CP057657 | ||
| Organism | Escherichia fergusonii strain RHB19-C05 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 223078..223181 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 222951..223219 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVX45_RS01075 | 219501..220163 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| HVX45_RS01080 | 220187..220843 | - | 657 | WP_000075607.1 | carbon-nitrogen hydrolase family protein | - |
| HVX45_RS01085 | 220950..221180 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| HVX45_RS01090 | 221319..221693 | + | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| HVX45_RS01095 | 221696..222568 | + | 873 | WP_046083499.1 | copper homeostasis membrane protein CopD | - |
| HVX45_RS01100 | 222580..222921 | + | 342 | WP_000976177.1 | YebY family protein | - |
| - | 222951..223219 | - | 269 | - | - | Antitoxin |
| - | 223078..223181 | + | 104 | - | - | Toxin |
| HVX45_RS01105 | 223315..223971 | + | 657 | WP_046083500.1 | protein-serine/threonine phosphatase | - |
| HVX45_RS01110 | 223972..224163 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HVX45_RS01115 | 224268..224504 | - | 237 | WP_002431586.1 | DUF1480 family protein | - |
| HVX45_RS01120 | 224623..226062 | - | 1440 | WP_046083520.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165612 NZ_CP057657:223078-223181 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT165612 NZ_CP057657:c223219-222951 [Escherichia fergusonii]
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
