Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2835908..2836055 | Replicon | chromosome |
| Accession | NZ_CP057630 | ||
| Organism | Citrobacter sp. RHB20-C16 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2835912..2836015 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2835908..2836055 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVX64_RS13555 | 2832914..2834455 | + | 1542 | WP_181825032.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HVX64_RS13560 | 2834570..2834806 | + | 237 | WP_161215572.1 | DUF1480 family protein | - |
| HVX64_RS13565 | 2834908..2835099 | + | 192 | WP_043000391.1 | YebW family protein | - |
| HVX64_RS13570 | 2835100..2835762 | - | 663 | WP_043000390.1 | protein-serine/threonine phosphatase | - |
| - | 2835908..2836055 | + | 148 | - | - | Antitoxin |
| - | 2835912..2836015 | - | 104 | - | - | Toxin |
| HVX64_RS13575 | 2836171..2836509 | - | 339 | WP_043000379.1 | YebY family protein | - |
| HVX64_RS13580 | 2836526..2837398 | - | 873 | WP_044257640.1 | copper homeostasis membrane protein CopD | - |
| HVX64_RS13585 | 2837401..2837775 | - | 375 | WP_044257639.1 | CopC domain-containing protein YobA | - |
| HVX64_RS13590 | 2837913..2838143 | + | 231 | WP_042318454.1 | DNA polymerase III subunit theta | - |
| HVX64_RS13595 | 2838252..2838914 | + | 663 | WP_044257638.1 | carbon-nitrogen hydrolase family protein | - |
| HVX64_RS13600 | 2838938..2839600 | + | 663 | WP_043000375.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165580 NZ_CP057630:c2836015-2835912 [Citrobacter sp. RHB20-C16]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT165580 NZ_CP057630:2835908-2836055 [Citrobacter sp. RHB20-C16]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCTGCG
