Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2683103..2683247 | Replicon | chromosome |
| Accession | NZ_CP057611 | ||
| Organism | Citrobacter sp. RHB21-C05 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2683109..2683212 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2683103..2683247 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVX72_RS12965 | 2680275..2681357 | + | 1083 | WP_181821524.1 | recombinase RecT | - |
| HVX72_RS12970 | 2681401..2681640 | + | 240 | WP_181821525.1 | DUF4060 family protein | - |
| HVX72_RS12975 | 2681705..2681977 | + | 273 | WP_181821526.1 | excisionase | - |
| HVX72_RS12980 | 2681946..2683031 | + | 1086 | WP_181821527.1 | tyrosine-type recombinase/integrase | - |
| - | 2683103..2683247 | + | 145 | - | - | Antitoxin |
| - | 2683109..2683212 | - | 104 | - | - | Toxin |
| HVX72_RS12985 | 2683368..2683706 | - | 339 | WP_060569589.1 | YebY family protein | - |
| HVX72_RS12990 | 2683723..2684595 | - | 873 | WP_181821528.1 | copper homeostasis membrane protein CopD | - |
| HVX72_RS12995 | 2684598..2684960 | - | 363 | WP_042287846.1 | CopC domain-containing protein YobA | - |
| HVX72_RS13000 | 2685098..2685328 | + | 231 | WP_042287849.1 | DNA polymerase III subunit theta | - |
| HVX72_RS13005 | 2685437..2686093 | + | 657 | WP_042287851.1 | carbon-nitrogen hydrolase family protein | - |
| HVX72_RS13010 | 2686117..2686779 | + | 663 | WP_042287853.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2607228..2710268 | 103040 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165551 NZ_CP057611:c2683212-2683109 [Citrobacter sp. RHB21-C05]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 145 bp
>AT165551 NZ_CP057611:2683103-2683247 [Citrobacter sp. RHB21-C05]
ACAGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGATGACGACGCCAGGTTTTCCAGT
