Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 3287752..3288371 Replicon chromosome
Accession NZ_CP057561
Organism Escherichia fergusonii strain RHB23-C02

Toxin (Protein)


Gene name Hha Uniprot ID V1H8E6
Locus tag HVX92_RS15710 Protein ID WP_001280991.1
Coordinates 3288153..3288371 (+) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID B7LLQ9
Locus tag HVX92_RS15705 Protein ID WP_000344803.1
Coordinates 3287752..3288126 (+) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HVX92_RS15695 3282884..3284077 + 1194 WP_002431407.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -
HVX92_RS15700 3284100..3287249 + 3150 WP_001132493.1 multidrug efflux RND transporter permease subunit -
HVX92_RS15705 3287752..3288126 + 375 WP_000344803.1 Hha toxicity modulator TomB Antitoxin
HVX92_RS15710 3288153..3288371 + 219 WP_001280991.1 hemolysin expression modulator Hha Toxin
HVX92_RS15715 3288868..3289338 + 471 WP_002431406.1 YlaC family protein -
HVX92_RS15720 3289477..3291027 + 1551 WP_001260376.1 EAL domain-containing protein -
HVX92_RS15725 3291069..3291422 - 354 WP_000878140.1 DUF1428 domain-containing protein -
HVX92_RS15735 3291801..3292112 + 312 WP_181811849.1 MGMT family protein -
HVX92_RS15740 3292143..3292715 - 573 WP_000779831.1 YbaY family lipoprotein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-116)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8613.97 Da        Isoelectric Point: 8.9008

>T165498 WP_001280991.1 NZ_CP057561:3288153-3288371 [Escherichia fergusonii]
MSDKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR

Download         Length: 219 bp

>T165498 NZ_CP073906:1913697-1913799 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14525.33 Da        Isoelectric Point: 4.8989

>AT165498 WP_000344803.1 NZ_CP057561:3287752-3288126 [Escherichia fergusonii]
MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAINLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYL
DDTFMLFSSYGINTQDLQKWRKSGNRLFRCFVNATRANPVSLSC

Download         Length: 375 bp

>AT165498 NZ_CP073906:c1913806-1913661 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 4ICG

Antitoxin

Source ID Structure
AlphaFold DB A0A7K4HRV1

References