Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2713804..2714039 | Replicon | chromosome |
| Accession | NZ_CP057506 | ||
| Organism | Citrobacter freundii strain RHB24-C05 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2713810..2713913 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2713804..2714039 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVY06_RS13030 | 2710961..2712382 | + | 1422 | WP_181506899.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HVY06_RS13035 | 2712483..2712719 | + | 237 | WP_161959030.1 | DUF1480 family protein | - |
| HVY06_RS13040 | 2712822..2713013 | + | 192 | WP_045444034.1 | YebW family protein | - |
| HVY06_RS13045 | 2713014..2713655 | - | 642 | WP_146716932.1 | protein-serine/threonine phosphatase | - |
| - | 2713804..2714039 | + | 236 | - | - | Antitoxin |
| - | 2713810..2713913 | - | 104 | - | - | Toxin |
| HVY06_RS13050 | 2714069..2714407 | - | 339 | WP_181491268.1 | YebY family protein | - |
| HVY06_RS13055 | 2714424..2715296 | - | 873 | WP_135911869.1 | copper homeostasis membrane protein CopD | - |
| HVY06_RS13060 | 2715301..2715675 | - | 375 | WP_135911868.1 | CopC domain-containing protein YobA | - |
| HVY06_RS13065 | 2715820..2716044 | + | 225 | WP_096756688.1 | DNA polymerase III subunit theta | - |
| HVY06_RS13070 | 2716151..2716807 | + | 657 | WP_115258187.1 | carbon-nitrogen hydrolase family protein | - |
| HVY06_RS13075 | 2716831..2717493 | + | 663 | WP_096756686.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165455 NZ_CP057506:c2713913-2713810 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 236 bp
>AT165455 NZ_CP057506:2713804-2714039 [Citrobacter freundii]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGG
CCTGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGG
CCTGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
