Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1911759..1911993 | Replicon | chromosome |
| Accession | NZ_CP057504 | ||
| Organism | Escherichia fergusonii strain RHB24-C08 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1911852..1911955 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1911759..1911993 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVY08_RS08850 | 1908288..1908950 | - | 663 | WP_046081495.1 | exodeoxyribonuclease X | - |
| HVY08_RS08855 | 1908974..1909630 | - | 657 | WP_046081494.1 | carbon-nitrogen hydrolase family protein | - |
| HVY08_RS08860 | 1909737..1909967 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| HVY08_RS08865 | 1910106..1910480 | + | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| HVY08_RS08870 | 1910483..1911355 | + | 873 | WP_181668434.1 | copper homeostasis membrane protein CopD | - |
| HVY08_RS08875 | 1911367..1911708 | + | 342 | WP_000976177.1 | YebY family protein | - |
| - | 1911759..1911993 | - | 235 | - | - | Antitoxin |
| - | 1911852..1911955 | + | 104 | - | - | Toxin |
| HVY08_RS08880 | 1912089..1912745 | + | 657 | WP_181674348.1 | protein-serine/threonine phosphatase | - |
| HVY08_RS08885 | 1912746..1912937 | - | 192 | WP_046081774.1 | YebW family protein | - |
| HVY08_RS08890 | 1913042..1913278 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HVY08_RS08895 | 1913397..1914836 | - | 1440 | WP_181674349.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165408 NZ_CP057504:1911852-1911955 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 235 bp
>AT165408 NZ_CP057504:c1911993-1911759 [Escherichia fergusonii]
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACC
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACC
