Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2494683..2494825 | Replicon | chromosome |
| Accession | NZ_CP057483 | ||
| Organism | Citrobacter sp. RHB25-C09 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2494686..2494789 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2494683..2494825 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVY19_RS11570 | 2492453..2494378 | + | 1926 | WP_181680742.1 | acyltransferase | - |
| - | 2494683..2494825 | + | 143 | - | - | Antitoxin |
| - | 2494686..2494789 | - | 104 | - | - | Toxin |
| HVY19_RS11575 | 2494945..2495283 | - | 339 | WP_181680743.1 | YebY family protein | - |
| HVY19_RS11580 | 2495301..2496173 | - | 873 | WP_181680744.1 | copper homeostasis membrane protein CopD | - |
| HVY19_RS11585 | 2496176..2496550 | - | 375 | WP_181680745.1 | CopC domain-containing protein YobA | - |
| HVY19_RS11590 | 2496690..2496920 | + | 231 | WP_181680746.1 | DNA polymerase III subunit theta | - |
| HVY19_RS11595 | 2497030..2497686 | + | 657 | WP_181680747.1 | carbon-nitrogen hydrolase family protein | - |
| HVY19_RS11600 | 2497710..2498372 | + | 663 | WP_181680748.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2464493..2516572 | 52079 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165392 NZ_CP057483:c2494789-2494686 [Citrobacter sp. RHB25-C09]
GCAAGGCGACTTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 143 bp
>AT165392 NZ_CP057483:2494683-2494825 [Citrobacter sp. RHB25-C09]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAAGTCGCCTTGCACTATAAGAATAGATGACGACGCCAGGTTTTCCAGT
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAAGTCGCCTTGCACTATAAGAATAGATGACGACGCCAGGTTTTCCAGT
