Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1943580..1943847 | Replicon | chromosome |
| Accession | NZ_CP057481 | ||
| Organism | Escherichia fergusonii strain RHB25-C10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1943706..1943809 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1943580..1943847 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVY20_RS09130 | 1940130..1940792 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| HVY20_RS09135 | 1940816..1941472 | - | 657 | WP_181666232.1 | carbon-nitrogen hydrolase family protein | - |
| HVY20_RS09140 | 1941579..1941809 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| HVY20_RS09145 | 1941948..1942322 | + | 375 | WP_181666233.1 | CopC domain-containing protein YobA | - |
| HVY20_RS09150 | 1942325..1943197 | + | 873 | WP_000928496.1 | copper homeostasis membrane protein CopD | - |
| HVY20_RS09155 | 1943209..1943550 | + | 342 | WP_000976177.1 | YebY family protein | - |
| - | 1943580..1943847 | - | 268 | - | - | Antitoxin |
| - | 1943706..1943809 | + | 104 | - | - | Toxin |
| HVY20_RS09160 | 1943943..1944599 | + | 657 | WP_181666234.1 | protein-serine/threonine phosphatase | - |
| HVY20_RS09165 | 1944600..1944791 | - | 192 | WP_002431587.1 | YebW family protein | - |
| HVY20_RS09170 | 1944896..1945132 | - | 237 | WP_002431586.1 | DUF1480 family protein | - |
| HVY20_RS09175 | 1945251..1946690 | - | 1440 | WP_181666235.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165370 NZ_CP057481:1943706-1943809 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 268 bp
>AT165370 NZ_CP057481:c1943847-1943580 [Escherichia fergusonii]
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCTAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGT
TCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCTAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGT
TCTGGTGAAAGAACTGAGGCGGTTTTTT
