Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 259958..260225 | Replicon | chromosome |
| Accession | NZ_CP057463 | ||
| Organism | Escherichia fergusonii strain RHB26-C03 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 260084..260187 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 259958..260225 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVY27_RS01310 | 256508..257170 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| HVY27_RS01315 | 257194..257850 | - | 657 | WP_181198935.1 | carbon-nitrogen hydrolase family protein | - |
| HVY27_RS01320 | 257957..258187 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| HVY27_RS01325 | 258326..258700 | + | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| HVY27_RS01330 | 258703..259575 | + | 873 | WP_181198936.1 | copper homeostasis membrane protein CopD | - |
| HVY27_RS01335 | 259587..259928 | + | 342 | WP_000976177.1 | YebY family protein | - |
| - | 259958..260225 | - | 268 | - | - | Antitoxin |
| - | 260084..260187 | + | 104 | - | - | Toxin |
| HVY27_RS01340 | 260321..260977 | + | 657 | WP_181198937.1 | protein-serine/threonine phosphatase | - |
| HVY27_RS01345 | 260978..261169 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HVY27_RS01350 | 261273..261509 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HVY27_RS01355 | 261628..263067 | - | 1440 | WP_181198938.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165330 NZ_CP057463:260084-260187 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 268 bp
>AT165330 NZ_CP057463:c260225-259958 [Escherichia fergusonii]
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTGT
TCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTGT
TCTGGTGAAAGAACTGAGGCGGTTTTTT
