Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1802754..1803021 | Replicon | chromosome |
| Accession | NZ_CP057458 | ||
| Organism | Escherichia fergusonii strain RHB26-C09 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1802880..1802983 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1802754..1803021 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVY30_RS08540 | 1799304..1799966 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| HVY30_RS08545 | 1799990..1800646 | - | 657 | WP_000075607.1 | carbon-nitrogen hydrolase family protein | - |
| HVY30_RS08550 | 1800753..1800983 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| HVY30_RS08555 | 1801122..1801496 | + | 375 | WP_181669742.1 | CopC domain-containing protein YobA | - |
| HVY30_RS08560 | 1801499..1802371 | + | 873 | WP_181669743.1 | copper homeostasis membrane protein CopD | - |
| HVY30_RS08565 | 1802383..1802724 | + | 342 | WP_000976177.1 | YebY family protein | - |
| - | 1802754..1803021 | - | 268 | - | - | Antitoxin |
| - | 1802880..1802983 | + | 104 | - | - | Toxin |
| HVY30_RS08570 | 1803117..1803773 | + | 657 | WP_181669744.1 | protein-serine/threonine phosphatase | - |
| HVY30_RS08575 | 1803774..1803965 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HVY30_RS08580 | 1804070..1804306 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HVY30_RS08585 | 1804424..1805863 | - | 1440 | WP_181669745.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165289 NZ_CP057458:1802880-1802983 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 268 bp
>AT165289 NZ_CP057458:c1803021-1802754 [Escherichia fergusonii]
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGT
TCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGT
TCTGGTGAAAGAACTGAGGCGGTTTTTT
