Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 230428..230696 | Replicon | chromosome |
| Accession | NZ_CP057357 | ||
| Organism | Escherichia fergusonii strain RHB28-C21 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 230555..230658 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 230428..230696 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVY57_RS01140 | 226977..227639 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| HVY57_RS01145 | 227663..228337 | - | 675 | WP_000824159.1 | carbon-nitrogen hydrolase family protein | - |
| HVY57_RS01150 | 228427..228657 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| HVY57_RS01155 | 228796..229170 | + | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| HVY57_RS01160 | 229173..230045 | + | 873 | WP_000928497.1 | copper homeostasis membrane protein CopD | - |
| HVY57_RS01165 | 230057..230398 | + | 342 | WP_000976176.1 | YebY family protein | - |
| - | 230428..230696 | - | 269 | - | - | Antitoxin |
| - | 230555..230658 | + | 104 | - | - | Toxin |
| HVY57_RS01170 | 230793..231449 | + | 657 | WP_000812748.1 | protein-serine/threonine phosphatase | - |
| HVY57_RS01175 | 231450..231641 | - | 192 | WP_002431587.1 | YebW family protein | - |
| HVY57_RS01180 | 231746..231982 | - | 237 | WP_002431586.1 | DUF1480 family protein | - |
| HVY57_RS01185 | 232101..233540 | - | 1440 | WP_181673016.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165255 NZ_CP057357:230555-230658 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT165255 NZ_CP057357:c230696-230428 [Escherichia fergusonii]
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
