Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1889634..1889869 | Replicon | chromosome |
| Accession | NZ_CP057353 | ||
| Organism | Citrobacter freundii strain RHB29-C07 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1889760..1889863 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1889634..1889869 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVY60_RS08765 | 1886180..1886842 | - | 663 | WP_096756686.1 | exodeoxyribonuclease X | - |
| HVY60_RS08770 | 1886866..1887522 | - | 657 | WP_115258187.1 | carbon-nitrogen hydrolase family protein | - |
| HVY60_RS08775 | 1887629..1887853 | - | 225 | WP_096756688.1 | DNA polymerase III subunit theta | - |
| HVY60_RS08780 | 1887998..1888372 | + | 375 | WP_115258189.1 | CopC domain-containing protein YobA | - |
| HVY60_RS08785 | 1888377..1889249 | + | 873 | WP_135911869.1 | copper homeostasis membrane protein CopD | - |
| HVY60_RS08790 | 1889266..1889604 | + | 339 | WP_181491268.1 | YebY family protein | - |
| - | 1889634..1889869 | - | 236 | - | - | Antitoxin |
| - | 1889760..1889863 | + | 104 | - | - | Toxin |
| HVY60_RS08795 | 1889941..1891026 | - | 1086 | WP_019076535.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| HVY60_RS08800 | 1890995..1891267 | - | 273 | WP_032170291.1 | excisionase | - |
| HVY60_RS08805 | 1891331..1891573 | - | 243 | WP_003841647.1 | DUF4060 family protein | - |
| HVY60_RS08810 | 1891560..1892213 | - | 654 | WP_077249780.1 | hypothetical protein | - |
| HVY60_RS08815 | 1892272..1893384 | - | 1113 | WP_117343347.1 | recombinase RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1882520..1953015 | 70495 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165242 NZ_CP057353:1889760-1889863 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 236 bp
>AT165242 NZ_CP057353:c1889869-1889634 [Citrobacter freundii]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGG
CCTGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGG
CCTGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
