Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 224621..224889 Replicon chromosome
Accession NZ_CP057266
Organism Escherichia fergusonii strain RHB31-C13

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 224748..224851 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 224621..224889 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HVY87_RS01090 221171..221833 - 663 WP_000946659.1 exodeoxyribonuclease X -
HVY87_RS01095 221857..222513 - 657 WP_000075607.1 carbon-nitrogen hydrolase family protein -
HVY87_RS01100 222620..222850 - 231 WP_000700614.1 DNA polymerase III subunit theta -
HVY87_RS01105 222989..223363 + 375 WP_000168725.1 CopC domain-containing protein YobA -
HVY87_RS01110 223366..224238 + 873 WP_046083499.1 copper homeostasis membrane protein CopD -
HVY87_RS01115 224250..224591 + 342 WP_000976177.1 YebY family protein -
- 224621..224889 - 269 - - Antitoxin
- 224748..224851 + 104 - - Toxin
HVY87_RS01120 224985..225641 + 657 WP_046083500.1 protein-serine/threonine phosphatase -
HVY87_RS01125 225642..225833 - 192 WP_001296140.1 YebW family protein -
HVY87_RS01130 225938..226174 - 237 WP_002431586.1 DUF1480 family protein -
HVY87_RS01135 226293..227732 - 1440 WP_046083520.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T165147 NZ_CP057266:224748-224851 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT165147 NZ_CP057266:c224889-224621 [Escherichia fergusonii]
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References