Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
Location | 224814..225081 | Replicon | chromosome |
Accession | NZ_CP057256 | ||
Organism | Escherichia fergusonii strain RHB31-C17 |
Toxin (RNA)
Gene name | SdsR | ||
Locus tag | - | ||
Coordinates | 224940..225043 (+) |
Antitoxin (RNA)
Gene name | RyeA | ||
Locus tag | - | ||
Coordinates | 224814..225081 (-) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
HVY91_RS01065 | 221364..222026 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
HVY91_RS01070 | 222050..222706 | - | 657 | WP_000075607.1 | carbon-nitrogen hydrolase family protein | - |
HVY91_RS01075 | 222813..223043 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
HVY91_RS01080 | 223182..223556 | + | 375 | WP_181669742.1 | CopC domain-containing protein YobA | - |
HVY91_RS01085 | 223559..224431 | + | 873 | WP_181669743.1 | copper homeostasis membrane protein CopD | - |
HVY91_RS01090 | 224443..224784 | + | 342 | WP_000976177.1 | YebY family protein | - |
- | 224814..225081 | - | 268 | - | - | Antitoxin |
- | 224940..225043 | + | 104 | - | - | Toxin |
HVY91_RS01095 | 225177..225833 | + | 657 | WP_181669744.1 | protein-serine/threonine phosphatase | - |
HVY91_RS01100 | 225834..226025 | - | 192 | WP_001296140.1 | YebW family protein | - |
HVY91_RS01105 | 226130..226366 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
HVY91_RS01110 | 226484..227923 | - | 1440 | WP_181669745.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165109 NZ_CP057256:224940-225043 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 268 bp
>AT165109 NZ_CP057256:c225081-224814 [Escherichia fergusonii]
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGT
TCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGT
TCTGGTGAAAGAACTGAGGCGGTTTTTT