Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 224814..225081 Replicon chromosome
Accession NZ_CP057256
Organism Escherichia fergusonii strain RHB31-C17

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 224940..225043 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 224814..225081 (-)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HVY91_RS01065 221364..222026 - 663 WP_000946659.1 exodeoxyribonuclease X -
HVY91_RS01070 222050..222706 - 657 WP_000075607.1 carbon-nitrogen hydrolase family protein -
HVY91_RS01075 222813..223043 - 231 WP_000700614.1 DNA polymerase III subunit theta -
HVY91_RS01080 223182..223556 + 375 WP_181669742.1 CopC domain-containing protein YobA -
HVY91_RS01085 223559..224431 + 873 WP_181669743.1 copper homeostasis membrane protein CopD -
HVY91_RS01090 224443..224784 + 342 WP_000976177.1 YebY family protein -
- 224814..225081 - 268 - - Antitoxin
- 224940..225043 + 104 - - Toxin
HVY91_RS01095 225177..225833 + 657 WP_181669744.1 protein-serine/threonine phosphatase -
HVY91_RS01100 225834..226025 - 192 WP_001296140.1 YebW family protein -
HVY91_RS01105 226130..226366 - 237 WP_001295499.1 DUF1480 family protein -
HVY91_RS01110 226484..227923 - 1440 WP_181669745.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T165109 NZ_CP057256:224940-225043 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 268 bp

>AT165109 NZ_CP057256:c225081-224814 [Escherichia fergusonii]
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGT
TCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References