Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 236272..236537 | Replicon | chromosome |
| Accession | NZ_CP057229 | ||
| Organism | Escherichia fergusonii strain RHB32-C16 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 236398..236501 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 236272..236537 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVZ03_RS01125 | 232822..233484 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| HVZ03_RS01130 | 233508..234164 | - | 657 | WP_000075607.1 | carbon-nitrogen hydrolase family protein | - |
| HVZ03_RS01135 | 234271..234501 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| HVZ03_RS01140 | 234640..235014 | + | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| HVZ03_RS01145 | 235017..235889 | + | 873 | WP_181668434.1 | copper homeostasis membrane protein CopD | - |
| HVZ03_RS01150 | 235901..236242 | + | 342 | WP_000976176.1 | YebY family protein | - |
| - | 236272..236537 | - | 266 | - | - | Antitoxin |
| - | 236398..236501 | + | 104 | - | - | Toxin |
| HVZ03_RS01155 | 236635..237291 | + | 657 | WP_000812708.1 | protein-serine/threonine phosphatase | - |
| HVZ03_RS01160 | 237292..237483 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HVZ03_RS01165 | 237588..237824 | - | 237 | WP_002431586.1 | DUF1480 family protein | - |
| HVZ03_RS01170 | 237943..239382 | - | 1440 | WP_181668435.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165003 NZ_CP057229:236398-236501 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 266 bp
>AT165003 NZ_CP057229:c236537-236272 [Escherichia fergusonii]
AGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATG
GCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGAC
GCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTC
TGGTGAAAGAACTGAGGCGGTTTTTT
AGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATG
GCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGAC
GCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTC
TGGTGAAAGAACTGAGGCGGTTTTTT
