Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1988705..1988970 | Replicon | chromosome |
| Accession | NZ_CP057220 | ||
| Organism | Escherichia fergusonii strain RHB32-C22 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1988831..1988934 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1988705..1988970 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVZ07_RS09485 | 1985255..1985917 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| HVZ07_RS09490 | 1985941..1986597 | - | 657 | WP_000075607.1 | carbon-nitrogen hydrolase family protein | - |
| HVZ07_RS09495 | 1986704..1986934 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| HVZ07_RS09500 | 1987073..1987447 | + | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| HVZ07_RS09505 | 1987450..1988322 | + | 873 | WP_181668434.1 | copper homeostasis membrane protein CopD | - |
| HVZ07_RS09510 | 1988334..1988675 | + | 342 | WP_000976176.1 | YebY family protein | - |
| - | 1988705..1988970 | - | 266 | - | - | Antitoxin |
| - | 1988831..1988934 | + | 104 | - | - | Toxin |
| HVZ07_RS09515 | 1989068..1989724 | + | 657 | WP_000812708.1 | protein-serine/threonine phosphatase | - |
| HVZ07_RS09520 | 1989725..1989916 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HVZ07_RS09525 | 1990021..1990257 | - | 237 | WP_002431586.1 | DUF1480 family protein | - |
| HVZ07_RS09530 | 1990376..1991815 | - | 1440 | WP_181668435.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T164980 NZ_CP057220:1988831-1988934 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 266 bp
>AT164980 NZ_CP057220:c1988970-1988705 [Escherichia fergusonii]
AGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATG
GCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGAC
GCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTC
TGGTGAAAGAACTGAGGCGGTTTTTT
AGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATG
GCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGAC
GCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTC
TGGTGAAAGAACTGAGGCGGTTTTTT
