Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1986548..1986816 | Replicon | chromosome |
| Accession | NZ_CP057210 | ||
| Organism | Escherichia fergusonii strain RHB33-C07 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1986675..1986778 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1986548..1986816 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVZ09_RS09425 | 1983098..1983760 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| HVZ09_RS09430 | 1983784..1984440 | - | 657 | WP_000075607.1 | carbon-nitrogen hydrolase family protein | - |
| HVZ09_RS09435 | 1984547..1984777 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| HVZ09_RS09440 | 1984916..1985290 | + | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| HVZ09_RS09445 | 1985293..1986165 | + | 873 | WP_181667362.1 | copper homeostasis membrane protein CopD | - |
| HVZ09_RS09450 | 1986177..1986518 | + | 342 | WP_000976177.1 | YebY family protein | - |
| - | 1986548..1986816 | - | 269 | - | - | Antitoxin |
| - | 1986675..1986778 | + | 104 | - | - | Toxin |
| HVZ09_RS09455 | 1986912..1987568 | + | 657 | WP_000812708.1 | protein-serine/threonine phosphatase | - |
| HVZ09_RS09460 | 1987569..1987760 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HVZ09_RS09465 | 1987865..1988101 | - | 237 | WP_002431586.1 | DUF1480 family protein | - |
| HVZ09_RS09470 | 1988220..1989659 | - | 1440 | WP_181591417.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T164901 NZ_CP057210:1986675-1986778 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT164901 NZ_CP057210:c1986816-1986548 [Escherichia fergusonii]
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
