Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2658084..2658231 Replicon chromosome
Accession NZ_CP057150
Organism Citrobacter sp. RHB35-C17

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2658088..2658191 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2658084..2658231 (+)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HVZ37_RS12565 2655090..2656631 + 1542 WP_181627565.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
HVZ37_RS12570 2656746..2656982 + 237 WP_161215572.1 DUF1480 family protein -
HVZ37_RS12575 2657084..2657275 + 192 WP_043000391.1 YebW family protein -
HVZ37_RS12580 2657276..2657938 - 663 WP_090049235.1 protein-serine/threonine phosphatase -
- 2658084..2658231 + 148 - - Antitoxin
- 2658088..2658191 - 104 - - Toxin
HVZ37_RS12585 2658347..2658685 - 339 WP_181627566.1 YebY family protein -
HVZ37_RS12590 2658702..2659574 - 873 WP_181627567.1 copper homeostasis membrane protein CopD -
HVZ37_RS12595 2659577..2659951 - 375 WP_181627568.1 CopC domain-containing protein YobA -
HVZ37_RS12600 2660089..2660319 + 231 WP_042318454.1 DNA polymerase III subunit theta -
HVZ37_RS12605 2660428..2661090 + 663 WP_104446580.1 carbon-nitrogen hydrolase family protein -
HVZ37_RS12610 2661114..2661776 + 663 WP_043000375.1 exodeoxyribonuclease X -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T164880 NZ_CP057150:c2658191-2658088 [Citrobacter sp. RHB35-C17]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 148 bp

>AT164880 NZ_CP057150:2658084-2658231 [Citrobacter sp. RHB35-C17]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCTGCG

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References