Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
Location | 2658084..2658231 | Replicon | chromosome |
Accession | NZ_CP057150 | ||
Organism | Citrobacter sp. RHB35-C17 |
Toxin (RNA)
Gene name | SdsR | ||
Locus tag | - | ||
Coordinates | 2658088..2658191 (-) |
Antitoxin (RNA)
Gene name | RyeA | ||
Locus tag | - | ||
Coordinates | 2658084..2658231 (+) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
HVZ37_RS12565 | 2655090..2656631 | + | 1542 | WP_181627565.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
HVZ37_RS12570 | 2656746..2656982 | + | 237 | WP_161215572.1 | DUF1480 family protein | - |
HVZ37_RS12575 | 2657084..2657275 | + | 192 | WP_043000391.1 | YebW family protein | - |
HVZ37_RS12580 | 2657276..2657938 | - | 663 | WP_090049235.1 | protein-serine/threonine phosphatase | - |
- | 2658084..2658231 | + | 148 | - | - | Antitoxin |
- | 2658088..2658191 | - | 104 | - | - | Toxin |
HVZ37_RS12585 | 2658347..2658685 | - | 339 | WP_181627566.1 | YebY family protein | - |
HVZ37_RS12590 | 2658702..2659574 | - | 873 | WP_181627567.1 | copper homeostasis membrane protein CopD | - |
HVZ37_RS12595 | 2659577..2659951 | - | 375 | WP_181627568.1 | CopC domain-containing protein YobA | - |
HVZ37_RS12600 | 2660089..2660319 | + | 231 | WP_042318454.1 | DNA polymerase III subunit theta | - |
HVZ37_RS12605 | 2660428..2661090 | + | 663 | WP_104446580.1 | carbon-nitrogen hydrolase family protein | - |
HVZ37_RS12610 | 2661114..2661776 | + | 663 | WP_043000375.1 | exodeoxyribonuclease X | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T164880 NZ_CP057150:c2658191-2658088 [Citrobacter sp. RHB35-C17]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT164880 NZ_CP057150:2658084-2658231 [Citrobacter sp. RHB35-C17]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCTGCG