Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3058707..3058850 | Replicon | chromosome |
| Accession | NZ_CP057147 | ||
| Organism | Citrobacter sp. RHB35-C21 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3058712..3058815 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3058707..3058850 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVZ39_RS14915 | 3054277..3055758 | + | 1482 | WP_181633701.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HVZ39_RS14920 | 3055859..3056095 | + | 237 | WP_029139506.1 | DUF1480 family protein | - |
| HVZ39_RS14925 | 3056198..3056389 | + | 192 | WP_016152779.1 | YebW family protein | - |
| HVZ39_RS14930 | 3056390..3057031 | - | 642 | WP_181632621.1 | protein-serine/threonine phosphatase | - |
| HVZ39_RS14935 | 3057109..3058389 | - | 1281 | WP_181632622.1 | hypothetical protein | - |
| - | 3058707..3058850 | + | 144 | - | - | Antitoxin |
| - | 3058712..3058815 | - | 104 | - | - | Toxin |
| HVZ39_RS14940 | 3058971..3059309 | - | 339 | WP_181632623.1 | YebY family protein | - |
| HVZ39_RS14945 | 3059330..3060202 | - | 873 | WP_049271209.1 | copper homeostasis membrane protein CopD | - |
| HVZ39_RS14950 | 3060206..3060580 | - | 375 | WP_181632624.1 | CopC domain-containing protein YobA | - |
| HVZ39_RS14955 | 3060724..3060954 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| HVZ39_RS14960 | 3061061..3061717 | + | 657 | WP_047415371.1 | carbon-nitrogen hydrolase family protein | - |
| HVZ39_RS14965 | 3061741..3062403 | + | 663 | WP_016152773.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T164861 NZ_CP057147:c3058815-3058712 [Citrobacter sp. RHB35-C21]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT164861 NZ_CP057147:3058707-3058850 [Citrobacter sp. RHB35-C21]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
