Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2949264..2949499 | Replicon | chromosome |
| Accession | NZ_CP057136 | ||
| Organism | Citrobacter freundii strain RHB36-C06 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2949270..2949373 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2949264..2949499 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVZ46_RS13980 | 2946421..2947842 | + | 1422 | WP_181617182.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HVZ46_RS13985 | 2947943..2948179 | + | 237 | WP_161959030.1 | DUF1480 family protein | - |
| HVZ46_RS13990 | 2948282..2948473 | + | 192 | WP_045444034.1 | YebW family protein | - |
| HVZ46_RS13995 | 2948474..2949115 | - | 642 | WP_181617183.1 | protein-serine/threonine phosphatase | - |
| - | 2949264..2949499 | + | 236 | - | - | Antitoxin |
| - | 2949270..2949373 | - | 104 | - | - | Toxin |
| HVZ46_RS14000 | 2949529..2949867 | - | 339 | WP_181617184.1 | YebY family protein | - |
| HVZ46_RS14005 | 2949884..2950756 | - | 873 | WP_181617185.1 | copper homeostasis membrane protein CopD | - |
| HVZ46_RS14010 | 2950761..2951135 | - | 375 | WP_181617186.1 | CopC domain-containing protein YobA | - |
| HVZ46_RS14015 | 2951280..2951504 | + | 225 | WP_181617187.1 | DNA polymerase III subunit theta | - |
| HVZ46_RS14020 | 2951611..2952267 | + | 657 | WP_181617188.1 | carbon-nitrogen hydrolase family protein | - |
| HVZ46_RS14025 | 2952291..2952953 | + | 663 | WP_096756686.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T164843 NZ_CP057136:c2949373-2949270 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 236 bp
>AT164843 NZ_CP057136:2949264-2949499 [Citrobacter freundii]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGG
CCTGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGG
CCTGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
