Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2731678..2731821 | Replicon | chromosome |
| Accession | NZ_CP057125 | ||
| Organism | Citrobacter sp. RHB36-C18 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2731683..2731786 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2731678..2731821 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVZ52_RS13025 | 2727248..2728729 | + | 1482 | WP_131352116.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HVZ52_RS13030 | 2728830..2729066 | + | 237 | WP_029139506.1 | DUF1480 family protein | - |
| HVZ52_RS13035 | 2729169..2729360 | + | 192 | WP_016152779.1 | YebW family protein | - |
| HVZ52_RS13040 | 2729361..2730002 | - | 642 | WP_047358581.1 | protein-serine/threonine phosphatase | - |
| HVZ52_RS13045 | 2730080..2731360 | - | 1281 | WP_181598325.1 | hypothetical protein | - |
| - | 2731678..2731821 | + | 144 | - | - | Antitoxin |
| - | 2731683..2731786 | - | 104 | - | - | Toxin |
| HVZ52_RS13050 | 2731942..2732280 | - | 339 | WP_003833793.1 | YebY family protein | - |
| HVZ52_RS13055 | 2732301..2733173 | - | 873 | WP_181598326.1 | copper homeostasis membrane protein CopD | - |
| HVZ52_RS13060 | 2733177..2733551 | - | 375 | WP_047415373.1 | CopC domain-containing protein YobA | - |
| HVZ52_RS13065 | 2733695..2733925 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| HVZ52_RS13070 | 2734032..2734688 | + | 657 | WP_016156222.1 | carbon-nitrogen hydrolase family protein | - |
| HVZ52_RS13075 | 2734712..2735374 | + | 663 | WP_181598327.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T164822 NZ_CP057125:c2731786-2731683 [Citrobacter sp. RHB36-C18]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT164822 NZ_CP057125:2731678-2731821 [Citrobacter sp. RHB36-C18]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
