Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1889453..1889721 | Replicon | chromosome |
| Accession | NZ_CP057104 | ||
| Organism | Escherichia fergusonii strain RHB38-C01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1889580..1889683 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1889453..1889721 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVZ66_RS09000 | 1886003..1886665 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| HVZ66_RS09005 | 1886689..1887345 | - | 657 | WP_000075607.1 | carbon-nitrogen hydrolase family protein | - |
| HVZ66_RS09010 | 1887452..1887682 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| HVZ66_RS09015 | 1887821..1888195 | + | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| HVZ66_RS09020 | 1888198..1889070 | + | 873 | WP_181591415.1 | copper homeostasis membrane protein CopD | - |
| HVZ66_RS09025 | 1889082..1889423 | + | 342 | WP_000976177.1 | YebY family protein | - |
| - | 1889453..1889721 | - | 269 | - | - | Antitoxin |
| - | 1889580..1889683 | + | 104 | - | - | Toxin |
| HVZ66_RS09030 | 1889817..1890473 | + | 657 | WP_181591416.1 | protein-serine/threonine phosphatase | - |
| HVZ66_RS09035 | 1890474..1890665 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HVZ66_RS09040 | 1890770..1891006 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HVZ66_RS09045 | 1891125..1892564 | - | 1440 | WP_181591417.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T164793 NZ_CP057104:1889580-1889683 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT164793 NZ_CP057104:c1889721-1889453 [Escherichia fergusonii]
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
