Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1973382..1973527 | Replicon | chromosome |
| Accession | NZ_CP057069 | ||
| Organism | Klebsiella pneumoniae strain RHB39-C09 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1973418..1973520 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1973382..1973527 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVZ81_RS09645 | 1968512..1970572 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HVZ81_RS09650 | 1970576..1971235 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HVZ81_RS09655 | 1971314..1971544 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HVZ81_RS09660 | 1971657..1972031 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HVZ81_RS09665 | 1972035..1972904 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| HVZ81_RS09670 | 1972921..1973259 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1973382..1973527 | - | 146 | - | - | Antitoxin |
| - | 1973418..1973520 | + | 103 | - | - | Toxin |
| HVZ81_RS09675 | 1973895..1974038 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HVZ81_RS09680 | 1974143..1975111 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| HVZ81_RS09685 | 1975268..1975921 | + | 654 | WP_020804905.1 | protein-serine/threonine phosphatase | - |
| HVZ81_RS09690 | 1975918..1976109 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HVZ81_RS09695 | 1976207..1976446 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HVZ81_RS09700 | 1976562..1977995 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T164703 NZ_CP057069:1973418-1973520 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT164703 NZ_CP057069:c1973527-1973382 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
