Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1848754..1848899 | Replicon | chromosome |
| Accession | NZ_CP057034 | ||
| Organism | Klebsiella pneumoniae strain RHB39-C24 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1848790..1848892 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1848754..1848899 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVZ90_RS09030 | 1843884..1845944 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HVZ90_RS09035 | 1845948..1846607 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| HVZ90_RS09040 | 1846686..1846916 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HVZ90_RS09045 | 1847029..1847403 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HVZ90_RS09050 | 1847407..1848276 | + | 870 | WP_023282759.1 | copper homeostasis membrane protein CopD | - |
| HVZ90_RS09055 | 1848293..1848631 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1848754..1848899 | - | 146 | - | - | Antitoxin |
| - | 1848790..1848892 | + | 103 | - | - | Toxin |
| HVZ90_RS09060 | 1849267..1849410 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HVZ90_RS09065 | 1849515..1850483 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HVZ90_RS09070 | 1850640..1851293 | + | 654 | WP_004175436.1 | protein-serine/threonine phosphatase | - |
| HVZ90_RS09075 | 1851290..1851481 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HVZ90_RS09080 | 1851579..1851818 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HVZ90_RS09085 | 1851934..1853367 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T164654 NZ_CP057034:1848790-1848892 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT164654 NZ_CP057034:c1848899-1848754 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
