Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2705585..2705853 | Replicon | chromosome |
| Accession | NZ_CP056961 | ||
| Organism | Escherichia fergusonii strain RHB41-C20 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2705623..2705726 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2705585..2705853 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV012_RS13345 | 2702743..2704182 | + | 1440 | WP_181588823.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV012_RS13350 | 2704300..2704536 | + | 237 | WP_002431586.1 | DUF1480 family protein | - |
| HV012_RS13355 | 2704641..2704832 | + | 192 | WP_181588824.1 | YebW family protein | - |
| HV012_RS13360 | 2704833..2705489 | - | 657 | WP_105283702.1 | protein-serine/threonine phosphatase | - |
| - | 2705585..2705853 | + | 269 | - | - | Antitoxin |
| - | 2705623..2705726 | - | 104 | - | - | Toxin |
| HV012_RS13365 | 2705883..2706224 | - | 342 | WP_181587604.1 | YebY family protein | - |
| HV012_RS13370 | 2706236..2707108 | - | 873 | WP_181587605.1 | copper homeostasis membrane protein CopD | - |
| HV012_RS13375 | 2707111..2707485 | - | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| HV012_RS13380 | 2707624..2707854 | + | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| HV012_RS13385 | 2707961..2708617 | + | 657 | WP_000075607.1 | carbon-nitrogen hydrolase family protein | - |
| HV012_RS13390 | 2708641..2709303 | + | 663 | WP_181587606.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T164576 NZ_CP056961:c2705726-2705623 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGTGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGTGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT164576 NZ_CP056961:2705585-2705853 [Escherichia fergusonii]
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCACTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCACTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
