Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1819754..1820022 | Replicon | chromosome |
| Accession | NZ_CP056916 | ||
| Organism | Escherichia fergusonii strain RHB42-C24 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1819881..1819984 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1819754..1820022 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV025_RS08690 | 1816304..1816966 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| HV025_RS08695 | 1816990..1817646 | - | 657 | WP_000075607.1 | carbon-nitrogen hydrolase family protein | - |
| HV025_RS08700 | 1817753..1817983 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| HV025_RS08705 | 1818122..1818496 | + | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| HV025_RS08710 | 1818499..1819371 | + | 873 | WP_046077481.1 | copper homeostasis membrane protein CopD | - |
| HV025_RS08715 | 1819383..1819724 | + | 342 | WP_000976177.1 | YebY family protein | - |
| - | 1819754..1820022 | - | 269 | - | - | Antitoxin |
| - | 1819881..1819984 | + | 104 | - | - | Toxin |
| HV025_RS08720 | 1820118..1820774 | + | 657 | WP_046077482.1 | protein-serine/threonine phosphatase | - |
| HV025_RS08725 | 1820775..1820966 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HV025_RS08730 | 1821071..1821307 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HV025_RS08735 | 1821425..1822864 | - | 1440 | WP_046077670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T164502 NZ_CP056916:1819881-1819984 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT164502 NZ_CP056916:c1820022-1819754 [Escherichia fergusonii]
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
