Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1889136..1889281 | Replicon | chromosome |
| Accession | NZ_CP056878 | ||
| Organism | Klebsiella pneumoniae strain RHBSTW-00066 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1889172..1889274 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1889136..1889281 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV051_RS09295 | 1884266..1886326 | + | 2061 | WP_032429395.1 | oligopeptidase B | - |
| HV051_RS09300 | 1886330..1886989 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HV051_RS09305 | 1887068..1887298 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HV051_RS09310 | 1887411..1887785 | + | 375 | WP_023286640.1 | CopC domain-containing protein YobA | - |
| HV051_RS09315 | 1887789..1888658 | + | 870 | WP_023286639.1 | copper homeostasis membrane protein CopD | - |
| HV051_RS09320 | 1888675..1889013 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1889136..1889281 | - | 146 | - | - | Antitoxin |
| - | 1889172..1889274 | + | 103 | - | - | Toxin |
| HV051_RS09325 | 1889648..1889791 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HV051_RS09330 | 1889896..1890864 | - | 969 | WP_074194451.1 | VirK/YbjX family protein | - |
| HV051_RS09335 | 1891021..1891674 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| HV051_RS09340 | 1891671..1891862 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HV051_RS09345 | 1891960..1892199 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HV051_RS09350 | 1892315..1893748 | - | 1434 | WP_181578168.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T164373 NZ_CP056878:1889172-1889274 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT164373 NZ_CP056878:c1889281-1889136 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
