Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1888839..1888984 | Replicon | chromosome |
| Accession | NZ_CP056854 | ||
| Organism | Klebsiella pneumoniae strain RHBSTW-00113 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1888875..1888977 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1888839..1888984 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV075_RS09185 | 1883969..1886029 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HV075_RS09190 | 1886033..1886692 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HV075_RS09195 | 1886771..1887001 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HV075_RS09200 | 1887114..1887488 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HV075_RS09205 | 1887492..1888361 | + | 870 | WP_023280292.1 | copper homeostasis membrane protein CopD | - |
| HV075_RS09210 | 1888378..1888716 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1888839..1888984 | - | 146 | - | - | Antitoxin |
| - | 1888875..1888977 | + | 103 | - | - | Toxin |
| HV075_RS09215 | 1889353..1889496 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HV075_RS09220 | 1889601..1890569 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HV075_RS09225 | 1890726..1891379 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| HV075_RS09230 | 1891376..1891567 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HV075_RS09235 | 1891665..1891904 | - | 240 | WP_032426373.1 | YebV family protein | - |
| HV075_RS09240 | 1892020..1893453 | - | 1434 | WP_181586377.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T164352 NZ_CP056854:1888875-1888977 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT164352 NZ_CP056854:c1888984-1888839 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
