Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2228167..2228308 | Replicon | chromosome |
| Accession | NZ_CP056852 | ||
| Organism | Citrobacter freundii strain RHBSTW-00119 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2228202..2228305 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2228167..2228308 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV078_RS10715 | 2224614..2225276 | - | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
| HV078_RS10720 | 2225300..2225956 | - | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| HV078_RS10725 | 2226063..2226293 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| HV078_RS10730 | 2226437..2226811 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| HV078_RS10735 | 2226815..2227687 | + | 873 | WP_032949522.1 | copper homeostasis membrane protein CopD | - |
| HV078_RS10740 | 2227708..2228046 | + | 339 | WP_003034934.1 | YebY family protein | - |
| - | 2228167..2228308 | - | 142 | - | - | Antitoxin |
| - | 2228202..2228305 | + | 104 | - | - | Toxin |
| HV078_RS10745 | 2228438..2229517 | - | 1080 | WP_032949521.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| HV078_RS10750 | 2229495..2229755 | - | 261 | WP_072211989.1 | hypothetical protein | - |
| HV078_RS10755 | 2229819..2232299 | - | 2481 | WP_050593527.1 | exonuclease | - |
| HV078_RS10760 | 2232441..2232767 | - | 327 | WP_032950892.1 | Rrf2 family transcriptional regulator | - |
| HV078_RS10765 | 2232825..2233040 | - | 216 | WP_032943037.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T164335 NZ_CP056852:2228202-2228305 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 142 bp
>AT164335 NZ_CP056852:c2228308-2228167 [Citrobacter freundii]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
