Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3041191..3041426 | Replicon | chromosome |
| Accession | NZ_CP056850 | ||
| Organism | Citrobacter freundii strain RHBSTW-00120 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3041197..3041300 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3041191..3041426 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV079_RS14700 | 3038348..3039769 | + | 1422 | WP_146716931.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV079_RS14705 | 3039870..3040106 | + | 237 | WP_161959030.1 | DUF1480 family protein | - |
| HV079_RS14710 | 3040209..3040400 | + | 192 | WP_045444034.1 | YebW family protein | - |
| HV079_RS14715 | 3040401..3041042 | - | 642 | WP_181636866.1 | protein-serine/threonine phosphatase | - |
| - | 3041191..3041426 | + | 236 | - | - | Antitoxin |
| - | 3041197..3041300 | - | 104 | - | - | Toxin |
| HV079_RS14720 | 3041456..3041794 | - | 339 | WP_181491268.1 | YebY family protein | - |
| HV079_RS14725 | 3041811..3042683 | - | 873 | WP_181217819.1 | copper homeostasis membrane protein CopD | - |
| HV079_RS14730 | 3042688..3043062 | - | 375 | WP_135911868.1 | CopC domain-containing protein YobA | - |
| HV079_RS14735 | 3043207..3043431 | + | 225 | WP_096756688.1 | DNA polymerase III subunit theta | - |
| HV079_RS14740 | 3043538..3044194 | + | 657 | WP_153879980.1 | carbon-nitrogen hydrolase family protein | - |
| HV079_RS14745 | 3044218..3044880 | + | 663 | WP_096756686.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T164320 NZ_CP056850:c3041300-3041197 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 236 bp
>AT164320 NZ_CP056850:3041191-3041426 [Citrobacter freundii]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGG
CCTGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGG
CCTGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
