Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2819215..2819356 | Replicon | chromosome |
| Accession | NZ_CP056839 | ||
| Organism | Citrobacter freundii strain RHBSTW-00126 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2819218..2819321 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2819215..2819356 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV083_RS13615 | 2814297..2814560 | - | 264 | WP_071891820.1 | hypothetical protein | - |
| HV083_RS13620 | 2814928..2815122 | + | 195 | WP_049025790.1 | hypothetical protein | - |
| HV083_RS13625 | 2815115..2815300 | + | 186 | WP_049016045.1 | hypothetical protein | - |
| HV083_RS13630 | 2815634..2817481 | + | 1848 | WP_049016093.1 | hypothetical protein | - |
| HV083_RS13635 | 2817478..2817711 | + | 234 | WP_137376489.1 | hypothetical protein | - |
| HV083_RS13640 | 2817768..2818028 | + | 261 | WP_049016044.1 | hypothetical protein | - |
| HV083_RS13645 | 2818006..2819085 | + | 1080 | WP_137376488.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2819215..2819356 | + | 142 | - | - | Antitoxin |
| - | 2819218..2819321 | - | 104 | - | - | Toxin |
| HV083_RS13650 | 2819477..2819815 | - | 339 | WP_003034934.1 | YebY family protein | - |
| HV083_RS13655 | 2819836..2820708 | - | 873 | WP_003034931.1 | copper homeostasis membrane protein CopD | - |
| HV083_RS13660 | 2820712..2821086 | - | 375 | WP_003841654.1 | CopC domain-containing protein YobA | - |
| HV083_RS13665 | 2821709..2822299 | + | 591 | WP_032939142.1 | hypothetical protein | - |
| HV083_RS13670 | 2822792..2822983 | + | 192 | WP_008322661.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2744398..2836265 | 91867 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T164297 NZ_CP056839:c2819321-2819218 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 142 bp
>AT164297 NZ_CP056839:2819215-2819356 [Citrobacter freundii]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
