Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2005678..2005823 | Replicon | chromosome |
| Accession | NZ_CP056830 | ||
| Organism | Klebsiella pneumoniae strain RHBSTW-00128 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2005714..2005816 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2005678..2005823 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV085_RS09700 | 2000808..2002868 | + | 2061 | WP_032419805.1 | oligopeptidase B | - |
| HV085_RS09705 | 2002872..2003531 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HV085_RS09710 | 2003610..2003840 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HV085_RS09715 | 2003953..2004327 | + | 375 | WP_020316569.1 | CopC domain-containing protein YobA | - |
| HV085_RS09720 | 2004331..2005200 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| HV085_RS09725 | 2005217..2005555 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2005678..2005823 | - | 146 | - | - | Antitoxin |
| - | 2005714..2005816 | + | 103 | - | - | Toxin |
| HV085_RS09730 | 2006191..2006334 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HV085_RS09735 | 2006439..2007407 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| HV085_RS09740 | 2007564..2008217 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| HV085_RS09745 | 2008214..2008405 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HV085_RS09750 | 2008503..2008742 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HV085_RS09755 | 2008858..2010291 | - | 1434 | WP_181578701.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T164257 NZ_CP056830:2005714-2005816 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT164257 NZ_CP056830:c2005823-2005678 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
