Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2079180..2079323 | Replicon | chromosome |
| Accession | NZ_CP056809 | ||
| Organism | Citrobacter freundii strain RHBSTW-00162 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2079215..2079318 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2079180..2079323 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV103_RS09900 | 2075627..2076289 | - | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
| HV103_RS09905 | 2076313..2076969 | - | 657 | WP_046671220.1 | carbon-nitrogen hydrolase family protein | - |
| HV103_RS09910 | 2077076..2077306 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| HV103_RS09915 | 2077450..2077824 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| HV103_RS09920 | 2077828..2078700 | + | 873 | WP_032935389.1 | copper homeostasis membrane protein CopD | - |
| HV103_RS09925 | 2078721..2079059 | + | 339 | WP_003034934.1 | YebY family protein | - |
| - | 2079180..2079323 | - | 144 | - | - | Antitoxin |
| - | 2079215..2079318 | + | 104 | - | - | Toxin |
| HV103_RS09930 | 2079396..2080481 | - | 1086 | WP_181635535.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| HV103_RS09935 | 2080450..2080722 | - | 273 | WP_016156226.1 | hypothetical protein | - |
| HV103_RS09940 | 2080787..2081029 | - | 243 | WP_003841647.1 | DUF4060 family protein | - |
| HV103_RS09945 | 2081069..2082160 | - | 1092 | WP_181635536.1 | recombinase RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2071976..2166311 | 94335 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T164239 NZ_CP056809:2079215-2079318 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT164239 NZ_CP056809:c2079323-2079180 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
