Detailed information of TA system TA164232

Bioinformatically predicted

Overview

TA module

• Type: IV
• Classification (family/domain): cptAB/-
• Location: 491552..492205
• Replicon: chromosome
• Accession: NZ_CP056784
• Organism: Acinetobacter baumannii strain TP1

Toxin (Protein)

• Gene name: cptA
• Uniprot ID: -
• Locus tag: HWQ22_RS02360
• Protein ID: WP_000607077.1
• Coordinates: 491816..492205 (+)
• Length: 130 a.a.

Antitoxin (Protein)

• Gene name: cptB
• Uniprot ID: V5V966
• Locus tag: HWQ22_RS02355
• Protein ID: WP_001288210.1
• Coordinates: 491552..491809 (+)
• Length: 86 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
HWQ22_RS02335	487068..488075	+	1008	WP_000198631.1	DNA-directed RNA polymerase subunit alpha	-
HWQ22_RS02340	488094..488471	+	378	WP_001216380.1	50S ribosomal protein L17	-
HWQ22_RS02345	488653..490143	+	1491	WP_000415125.1	NAD(P)/FAD-dependent oxidoreductase	-
HWQ22_RS02350	490192..491364	-	1173	WP_001190542.1	acyl-CoA dehydrogenase family protein	-
HWQ22_RS02355	491552..491809	+	258	WP_001288210.1	succinate dehydrogenase assembly factor 2	Antitoxin
HWQ22_RS02360	491816..492205	+	390	WP_000607077.1	membrane protein	Toxin
HWQ22_RS02365	492975..494060	+	1086	WP_000049106.1	hypothetical protein	-
HWQ22_RS02370	494138..494704	+	567	WP_000651538.1	rhombosortase	-
HWQ22_RS02375	494892..497087	+	2196	WP_001158906.1	TRAP transporter large permease subunit	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

No domain identified.

Antitoxin

• Flavinator of succinate dehydrogenase (10-82)

Sequences

Toxin

Protein

• Length: 130 a.a.
• Molecular weight: 15552.88 Da
• Isoelectric Point: 10.4313

>T164232 WP_000607077.1 NZ_CP056784:491816-492205 [Acinetobacter baumannii]
MINHLNFKLKYSRFSIIFQFFIGLSLAVLFYQLMPLLWWLVVISLLFISFIFFLKRPQLAQIAYLDKKLWSLAYKSQNTV
SRVKILKIIDCQIFIVIYFEGHKTLTSIIWFDQMSLAEWKKLKTLEKLY

Nucleotide

• Length: 390 bp

>T164232 NZ_CP072848:420653-420940 [Vibrio cholerae]
ATGACCTATAAGTTAAAGTTTCTGCCGGCTGCGCAAAAGGAATGGAGTAAGTTAGCTCCGACAATTCAGAGTCAGTTCAA
GAAGAAGTTAAAGGAACGATTAGAAAATCCGCACGTCCCTTCGGCTAAGCTTCGAGGATACGACGCTGTTTACAAGATTA
AACTTCGTACGGCGGGTTATCGTTTAGCTTATGAGGTTATTGACGATGAGATAGTTGTCTATGTCCTTGCTGTCGGTAAA
CGTGACAAAGATGCTGTCTATAAAAAACTGGCTTCACGCTTCGGTTAG

Antitoxin

Protein

• Length: 86 a.a.
• Molecular weight: 10318.77 Da
• Isoelectric Point: 4.6150

>AT164232 WP_001288210.1 NZ_CP056784:491552-491809 [Acinetobacter baumannii]
MSEEMTLEERKVIYRARRGLKEIDVYFDPYVKNYYLKADPAEKALFAELVEQEDPDLLDWFMEVSEPPRTELRDFIYKLK
HYVHG

Nucleotide

• Length: 258 bp

>AT164232 NZ_CP072848:420412-420663 [Vibrio cholerae]
ATGAGACAAGTTTTAGCGAATTGCTCTGCAAGTATTTCAGAGTTAAAGAAGAACCCAACAGCTTTGTTGAATGAGGCTGA
TGGGTCTGCAATTGCAATTTTAAACCACAACAAGCCAGCGGCTTACCTTGTGCCAGCGGAAACGTATGAGTATCTCATCG
ATATGCTCGATGATTATGAGCTTTCCCAAATTGTCGATAGTCGCCGAGCTGACTTAGCACAAGCTGTGGAAGTAAATATT
GATGACCTATAA

Structures

Antitoxin

• AlphaFold DB: A0A7U4BQM7