Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4712109..4712309 | Replicon | chromosome |
| Accession | NZ_CP056779 | ||
| Organism | Enterobacter cloacae strain D41-sc-1712200 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4712202..4712305 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4712109..4712309 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HWQ17_RS22320 | 4708646..4709308 | - | 663 | WP_148418063.1 | exodeoxyribonuclease X | - |
| HWQ17_RS22325 | 4709333..4709983 | - | 651 | WP_148418062.1 | carbon-nitrogen hydrolase family protein | - |
| HWQ17_RS22330 | 4710095..4710325 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| HWQ17_RS22335 | 4710463..4710834 | + | 372 | WP_148418285.1 | CopC domain-containing protein YobA | - |
| HWQ17_RS22340 | 4710836..4711705 | + | 870 | WP_148418061.1 | copper homeostasis membrane protein CopD | - |
| HWQ17_RS22345 | 4711722..4712060 | + | 339 | WP_148418060.1 | YebY family protein | - |
| - | 4712109..4712309 | - | 201 | - | - | Antitoxin |
| - | 4712202..4712305 | + | 104 | - | - | Toxin |
| HWQ17_RS22350 | 4712817..4713227 | - | 411 | WP_176678696.1 | PAS domain-containing protein | - |
| HWQ17_RS22355 | 4713984..4714925 | - | 942 | WP_148418057.1 | VirK/YbjX family protein | - |
| HWQ17_RS22360 | 4715093..4715737 | + | 645 | WP_148418056.1 | protein-serine/threonine phosphatase | - |
| HWQ17_RS22365 | 4715772..4716011 | - | 240 | WP_006176013.1 | DUF1480 family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T164221 NZ_CP056779:4712202-4712305 [Enterobacter cloacae]
GGCAAGGCGACAGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACAGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 201 bp
>AT164221 NZ_CP056779:c4712309-4712109 [Enterobacter cloacae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTCTGTCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGCC
TGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTCTGTCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGCC
TGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
