Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2198131..2198299 | Replicon | chromosome |
| Accession | NZ_CP056760 | ||
| Organism | Klebsiella grimontii strain RHBSTW-00186 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2198189..2198292 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2198131..2198299 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV114_RS10640 | 2193257..2195317 | + | 2061 | WP_064342867.1 | oligopeptidase B | - |
| HV114_RS10645 | 2195324..2195983 | - | 660 | WP_004134816.1 | exodeoxyribonuclease X | - |
| HV114_RS10650 | 2196062..2196292 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| HV114_RS10655 | 2196428..2196802 | + | 375 | WP_004134817.1 | CopC domain-containing protein YobA | - |
| HV114_RS10660 | 2196807..2197676 | + | 870 | WP_004134819.1 | copper homeostasis membrane protein CopD | - |
| HV114_RS10665 | 2197693..2198031 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2198131..2198299 | - | 169 | - | - | Antitoxin |
| - | 2198189..2198292 | + | 104 | - | - | Toxin |
| HV114_RS10670 | 2198417..2199376 | - | 960 | WP_049085573.1 | spore coat U domain-containing protein | - |
| HV114_RS10675 | 2199391..2201721 | - | 2331 | WP_049089570.1 | fimbrial biogenesis outer membrane usher protein | - |
| HV114_RS10680 | 2201724..2202488 | - | 765 | WP_004134823.1 | molecular chaperone | - |
| HV114_RS10685 | 2202507..2203025 | - | 519 | WP_049099811.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2125671..2221182 | 95511 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T164169 NZ_CP056760:2198189-2198292 [Klebsiella grimontii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT164169 NZ_CP056760:c2198299-2198131 [Klebsiella grimontii]
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
