Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2310855..2311056 | Replicon | chromosome |
| Accession | NZ_CP056747 | ||
| Organism | Enterobacter hormaechei strain RHBSTW-00217 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2310948..2311051 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2310855..2311056 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV129_RS10985 | 2307393..2308055 | - | 663 | WP_047051600.1 | exodeoxyribonuclease X | - |
| HV129_RS10990 | 2308080..2308730 | - | 651 | WP_048982489.1 | carbon-nitrogen hydrolase family protein | - |
| HV129_RS10995 | 2308842..2309072 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| HV129_RS11000 | 2309210..2309581 | + | 372 | WP_047051768.1 | CopC domain-containing protein YobA | - |
| HV129_RS11005 | 2309583..2310452 | + | 870 | WP_048982486.1 | copper homeostasis membrane protein CopD | - |
| HV129_RS11010 | 2310469..2310807 | + | 339 | WP_003859787.1 | YebY family protein | - |
| - | 2310855..2311056 | - | 202 | - | - | Antitoxin |
| HV129_RS11015 | 2310932..2311129 | - | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2310948..2311051 | + | 104 | - | - | Toxin |
| HV129_RS11020 | 2311175..2312155 | - | 981 | WP_047051764.1 | VirK/YbjX family protein | - |
| HV129_RS11025 | 2312323..2312967 | + | 645 | WP_047051763.1 | protein-serine/threonine phosphatase | - |
| HV129_RS11030 | 2313002..2313241 | - | 240 | WP_006811010.1 | YebV family protein | - |
| HV129_RS11035 | 2313348..2314811 | - | 1464 | WP_047051762.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2261502..2317501 | 55999 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T164108 NZ_CP056747:2310948-2311051 [Enterobacter hormaechei]
GGCAGGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT164108 NZ_CP056747:c2311056-2310855 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCCTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCCTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
