Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2957386..2957537 | Replicon | chromosome |
| Accession | NZ_CP056737 | ||
| Organism | Enterobacter roggenkampii strain RHBSTW-00309 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2957399..2957502 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2957386..2957537 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV150_RS14370 | 2953661..2955103 | + | 1443 | WP_106105747.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV150_RS14375 | 2955210..2955449 | + | 240 | WP_008500472.1 | YebV family protein | - |
| HV150_RS14380 | 2955484..2956128 | - | 645 | WP_106105746.1 | protein-serine/threonine phosphatase | - |
| HV150_RS14385 | 2956294..2957235 | + | 942 | WP_181543899.1 | VirK/YbjX family protein | - |
| - | 2957386..2957537 | + | 152 | - | - | Antitoxin |
| - | 2957399..2957502 | - | 104 | - | - | Toxin |
| HV150_RS14390 | 2957641..2957979 | - | 339 | WP_008500468.1 | YebY family protein | - |
| HV150_RS14395 | 2957996..2958865 | - | 870 | WP_032675032.1 | copper homeostasis membrane protein CopD | - |
| HV150_RS14400 | 2958867..2959238 | - | 372 | WP_106105744.1 | CopC domain-containing protein YobA | - |
| HV150_RS14405 | 2959376..2959606 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| HV150_RS14410 | 2959717..2960367 | + | 651 | WP_106105743.1 | carbon-nitrogen hydrolase family protein | - |
| HV150_RS14415 | 2960392..2961054 | + | 663 | WP_106105742.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T164063 NZ_CP056737:c2957502-2957399 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 152 bp
>AT164063 NZ_CP056737:2957386-2957537 [Enterobacter roggenkampii]
CTTTTATGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTTATGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
