Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2774917..2775118 | Replicon | chromosome |
| Accession | NZ_CP056727 | ||
| Organism | Enterobacter hormaechei strain RHBSTW-00316 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2774922..2775025 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2774917..2775118 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV155_RS13355 | 2771164..2772627 | + | 1464 | WP_045623244.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV155_RS13360 | 2772732..2772971 | + | 240 | WP_006811010.1 | YebV family protein | - |
| HV155_RS13365 | 2773006..2773650 | - | 645 | WP_038416258.1 | protein-serine/threonine phosphatase | - |
| HV155_RS13370 | 2773818..2774798 | + | 981 | WP_045623245.1 | VirK/YbjX family protein | - |
| HV155_RS13375 | 2774844..2775041 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2774917..2775118 | + | 202 | - | - | Antitoxin |
| - | 2774922..2775025 | - | 104 | - | - | Toxin |
| HV155_RS13380 | 2775167..2775505 | - | 339 | WP_022648464.1 | YebY family protein | - |
| HV155_RS13385 | 2775522..2776391 | - | 870 | WP_045623248.1 | copper homeostasis membrane protein CopD | - |
| HV155_RS13390 | 2776393..2776764 | - | 372 | WP_023300433.1 | CopC domain-containing protein YobA | - |
| HV155_RS13395 | 2776902..2777132 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| HV155_RS13400 | 2777244..2777882 | + | 639 | WP_045623249.1 | carbon-nitrogen hydrolase family protein | - |
| HV155_RS13405 | 2777907..2778569 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2765809..2850217 | 84408 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T164044 NZ_CP056727:c2775025-2774922 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT164044 NZ_CP056727:2774917-2775118 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
