Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3073422..3073566 | Replicon | chromosome |
| Accession | NZ_CP056717 | ||
| Organism | Citrobacter sp. RHBSTW-00599 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3073428..3073531 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3073422..3073566 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV243_RS15210 | 3069744..3070853 | + | 1110 | WP_053389203.1 | recombinase RecT | - |
| HV243_RS15215 | 3070888..3071721 | + | 834 | WP_053389204.1 | DNA adenine methylase | - |
| HV243_RS15220 | 3071718..3071960 | + | 243 | WP_053389205.1 | DUF4060 family protein | - |
| HV243_RS15225 | 3072024..3072296 | + | 273 | WP_032170291.1 | excisionase | - |
| HV243_RS15230 | 3072265..3073350 | + | 1086 | WP_019076535.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 3073422..3073566 | + | 145 | - | - | Antitoxin |
| - | 3073428..3073531 | - | 104 | - | - | Toxin |
| HV243_RS15235 | 3073687..3074025 | - | 339 | WP_003833793.1 | YebY family protein | - |
| HV243_RS15240 | 3074046..3074918 | - | 873 | WP_053389206.1 | copper homeostasis membrane protein CopD | - |
| HV243_RS15245 | 3074922..3075296 | - | 375 | WP_046276426.1 | CopC domain-containing protein YobA | - |
| HV243_RS15250 | 3075440..3075670 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| HV243_RS15255 | 3075777..3076433 | + | 657 | WP_053389207.1 | carbon-nitrogen hydrolase family protein | - |
| HV243_RS15260 | 3076457..3077119 | + | 663 | WP_016152773.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3021689..3079200 | 57511 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T164013 NZ_CP056717:c3073531-3073428 [Citrobacter sp. RHBSTW-00599]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT164013 NZ_CP056717:3073422-3073566 [Citrobacter sp. RHBSTW-00599]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
