Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2736028..2736179 | Replicon | chromosome |
| Accession | NZ_CP056716 | ||
| Organism | Enterobacter asburiae strain RHBSTW-00516 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2736041..2736144 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2736028..2736179 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV228_RS13470 | 2732300..2733742 | + | 1443 | WP_181593342.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV228_RS13475 | 2733849..2734088 | + | 240 | WP_008500472.1 | YebV family protein | - |
| HV228_RS13480 | 2734123..2734767 | - | 645 | WP_181593343.1 | protein-serine/threonine phosphatase | - |
| HV228_RS13485 | 2734934..2735875 | + | 942 | WP_181593344.1 | VirK/YbjX family protein | - |
| - | 2736028..2736179 | + | 152 | - | - | Antitoxin |
| - | 2736041..2736144 | - | 104 | - | - | Toxin |
| HV228_RS13490 | 2736283..2736621 | - | 339 | WP_045404471.1 | YebY family protein | - |
| HV228_RS13495 | 2736638..2737507 | - | 870 | WP_181593345.1 | copper homeostasis membrane protein CopD | - |
| HV228_RS13500 | 2737509..2737880 | - | 372 | WP_033145842.1 | CopC domain-containing protein YobA | - |
| HV228_RS13505 | 2738017..2738247 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| HV228_RS13510 | 2738358..2739008 | + | 651 | WP_181593346.1 | carbon-nitrogen hydrolase family protein | - |
| HV228_RS13515 | 2739033..2739695 | + | 663 | WP_181593347.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163997 NZ_CP056716:c2736144-2736041 [Enterobacter asburiae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 152 bp
>AT163997 NZ_CP056716:2736028-2736179 [Enterobacter asburiae]
CTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
