Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2923020..2923171 | Replicon | chromosome |
| Accession | NZ_CP056711 | ||
| Organism | Enterobacter asburiae strain RHBSTW-00542 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2923033..2923136 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2923020..2923171 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV233_RS14475 | 2919293..2920735 | + | 1443 | WP_045355984.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV233_RS14480 | 2920842..2921081 | + | 240 | WP_008500472.1 | YebV family protein | - |
| HV233_RS14485 | 2921116..2921760 | - | 645 | WP_045355983.1 | protein-serine/threonine phosphatase | - |
| HV233_RS14490 | 2921926..2922867 | + | 942 | WP_045355982.1 | VirK/YbjX family protein | - |
| - | 2923020..2923171 | + | 152 | - | - | Antitoxin |
| - | 2923033..2923136 | - | 104 | - | - | Toxin |
| HV233_RS14495 | 2923275..2923613 | - | 339 | WP_045355981.1 | YebY family protein | - |
| HV233_RS14500 | 2923630..2924499 | - | 870 | WP_045355980.1 | copper homeostasis membrane protein CopD | - |
| HV233_RS14505 | 2924501..2924872 | - | 372 | WP_045355979.1 | CopC domain-containing protein YobA | - |
| HV233_RS14510 | 2925009..2925239 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| HV233_RS14515 | 2925350..2926000 | + | 651 | WP_045355978.1 | carbon-nitrogen hydrolase family protein | - |
| HV233_RS14520 | 2926025..2926687 | + | 663 | WP_045355977.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163982 NZ_CP056711:c2923136-2923033 [Enterobacter asburiae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 152 bp
>AT163982 NZ_CP056711:2923020-2923171 [Enterobacter asburiae]
CTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
