Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2842714..2842915 | Replicon | chromosome |
| Accession | NZ_CP056691 | ||
| Organism | Enterobacter hormaechei strain RHBSTW-00626 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2842719..2842822 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2842714..2842915 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV249_RS13875 | 2838961..2840424 | + | 1464 | WP_045623244.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV249_RS13880 | 2840529..2840768 | + | 240 | WP_006811010.1 | YebV family protein | - |
| HV249_RS13885 | 2840803..2841447 | - | 645 | WP_038416258.1 | protein-serine/threonine phosphatase | - |
| HV249_RS13890 | 2841615..2842595 | + | 981 | WP_045623245.1 | VirK/YbjX family protein | - |
| HV249_RS13895 | 2842641..2842838 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2842714..2842915 | + | 202 | - | - | Antitoxin |
| - | 2842719..2842822 | - | 104 | - | - | Toxin |
| HV249_RS13900 | 2842964..2843302 | - | 339 | WP_022648464.1 | YebY family protein | - |
| HV249_RS13905 | 2843319..2844188 | - | 870 | WP_045623248.1 | copper homeostasis membrane protein CopD | - |
| HV249_RS13910 | 2844190..2844561 | - | 372 | WP_023300433.1 | CopC domain-containing protein YobA | - |
| HV249_RS13915 | 2844699..2844929 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| HV249_RS13920 | 2845041..2845679 | + | 639 | WP_045623249.1 | carbon-nitrogen hydrolase family protein | - |
| HV249_RS13925 | 2845704..2846366 | + | 663 | Protein_2722 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163893 NZ_CP056691:c2842822-2842719 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT163893 NZ_CP056691:2842714-2842915 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
